/***************************************************************************
 *   Copyright (C) 2007 by Alexandre Masselot,,,   *
 *   alex@alex-laptop   *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU Library General Public License as       *
 *   published by the Free Software Foundation; either version 2 of the    *
 *   License, or (at your option) any later version.                       *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU Library General Public     *
 *   License along with this program; if not, write to the                 *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 ***************************************************************************/
#include "utils/enzymetrypsin.h"
#include "utils/peptidemodifier.h"

#include <iostream>
#include <vector>

using namespace std;
using namespace bol;
int main(int argc, char **argv){
  PeptideModifier peptmodifier;
  Peptide pept("ACDKEFGHRIKLKPRMNO");
  peptmodifier.printPeptide(cout, &pept);
  cout<<endl;
  Enzyme *enzyme=new EnzymeTrypsin();

  //build a list of peptide out of the passed one and the modif set in the mofifier
  vector<Peptide> vpept;
  enzyme->cleave(pept, vpept);

  for(vector<Peptide>::const_iterator it=vpept.begin(); it<vpept.end(); it++){
      peptmodifier.printPeptide(cout, &(*it));
      cout<<"\t"<<it->getMass();
      cout<<endl;
  }
  return 0;
}
